On reflection, it probably is - the fact remains the discolouration (which is common) does not seem to affect performance, and does not warrant drastic removal action. Simply inserting and removing a plug should be sufficient.
You COULD do this, but Raspbian now has gpio-shutdown built in.
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UUID=4AF49046F4903663 /mnt/Seagate ntfs ro,noauto,relatime,umask=22,uid=0,gid=0,nls=utf8 0 0